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dc.contributor.advisorFry, Stephen
dc.contributor.advisorDoerner, Peter
dc.contributor.authorBegum, Rifat Ara
dc.date.accessioned2022-01-18T14:14:25Z
dc.date.available2022-01-18T14:14:25Z
dc.date.issued2021-12-07
dc.identifier.urihttps://hdl.handle.net/1842/38434
dc.identifier.urihttp://dx.doi.org/10.7488/era/1698
dc.description.abstractRhamnogalacturonan-II (RG-II) is a ~5 kDa pectic polysaccharide domain, which typically represents 1–4% of the total polysaccharide of the primary cell wall in dicots. It has a complex structure with a backbone of 8-10 galacturonic acid (GalA) residues, to which are attached 6 different sidechains (A–F). In vivo, RG-II is prevalent in its dimeric form, which is produced by borate-diester bridge formation between two sidechain A apiose residues from two RG-II molecules. RG-II dimerisation is important for maintaining cell wall porosity, thickness, and biophysical properties for cell growth. But dimerisation is not inevitable even in the presence of boric acid; it also requires the presence of a cationic ‘chaperone’. In this project, the effect of acidic pH on RG-II was studied in vitro, to understand the role of RG-II and its dimerisation during auxin induced acid growth of cells. The effect of alkaline pH on RG-II was investigated to understand the importance of ester groups affecting the charge:mass ratio of RG-II. In-vivo 14C-radiolabelling using Paul’s scarlet Rosa and Arabidopsis cultures was conducted to understand the kinetics of RG-II dimerisation. RG-II monomers and dimers were separated and observed using polyacrylamide gel electrophoresis and silver nitrate staining, and newly synthesised RG-II domains were traced in vivo by pulse-labelling with [14C]glucose. In-vitro study on the effect of acidic pH showed that RG-II dimerisation is favoured at physiologically acidic pH (~4.0–5.0, mimicking the apoplastic pH during auxin-induced growth) in presence of boron and cationic chaperones. Alkaline pH affected the esterification status of RG-II, hence controlling the sites accessible to pectolytic enzymes and affecting the charge:mass ratio of RG-II. The in-vivo 14C-radiolabelling kinetic study on living Rosa and Arabidopsis cells showed that [14C]RG-II is synthesised and dimerised intra-cellularly, rather than after secretion. Another study supported this intracellular localisation of dimerisation by showing the inability of added apoplastic apiose (which cannot enter the symplast) to prevent RG-II dimerisation. A study conducted on glycosylinositol phosphorylceramide (GIPCs) gave inconclusive results regarding its hypothesized role as a boron-donor. Alongside these studies, it was found that the three classical lysine-rich arabinogalactan proteins of A. thaliana (AtAGP17, AtAGP18 and AtAGP19) are potential biological chaperones for promoting RG-II dimerisation: specifically, certain highly basic peptide fragments (DP 10– 13) of these three AGPs promoted RG-II dimerisation in vitro. Overall, these studies open the possibility of conducting future studies for revealing the detailed biochemical character and biological roles of RG-II and the proposed AGPs as cationic chaperones for RG-II dimerisation in vivo.en
dc.contributor.sponsorotheren
dc.language.isoenen
dc.publisherThe University of Edinburghen
dc.relation.hasversionBegum RA, Sanhueza D, Fry SC, Knight MR and Knight H. 2019. MUR1-mediated cell wall fucosylation is required for freezing tolerance in Arabidopsis thaliana. New Phytologist 224: 1518–1531en
dc.subjectRhamnogalacturonan-IIen
dc.subjectCationic chaperoneen
dc.subjectGIPCen
dc.subjectpHen
dc.subjectradiolabellingen
dc.titleBoron cross-linking of rhamnogalacturonan-II in vivo and in vitro: effects of pH and cationic chaperones.en
dc.typeThesis or Dissertationen
dc.type.qualificationlevelDoctoralen
dc.type.qualificationnamePhD Doctor of Philosophyen
dc.rights.embargodate2022-12-07en
dcterms.accessRightsRestricted Accessen


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